Software

Software

Several of our recent software projects are hosted here.

RadiĆ© – Mapping and evaluating characters on radial phylogenetic trees

GenGIS – Geospatial Analysis of Environmental Genomic Data [site under development]

Many of our other software projects are currently hosted by the Australian Centre of Excellence in Bioinformatics:

GANN – Genetic Algorithm Neural Networks for biological pattern detection

WOOF – a Word-Oriented Objective Function for validation of multiple sequence alignments

EEEP – Efficient Evaluation of Edit Paths to infer lateral genetic transfer events from phylogenetic tree comparisons

EvolSimulator – simulation of gene, protein, and genome evolution


Data Sets

The data from the 2005 PNAS paper “Highways of gene sharing in prokaryotes can be found here.

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