Useful Software

From Bioinformatics Software
Revision as of 18:06, 13 June 2008 by Christian (Talk | contribs)

Jump to: navigation, search

Contents

Machine Learning

  • libSVM - Support vector machine library for classification and/or regression.


Molecular Visualization

  • VMD - 3D molecular visualization and animation. You'll need csh and libc++5 to have it running properly.

Phylogenetic Networks

  • SplitsTree - Computes phylogenetic trees and networks from molecular sequence data, distance matrices, etc.
  • RaxML - ML Phylogenies

Statistical Analysis

  • R - The R Project for Statistical Computing
    • Scott has put together a few R Notes