# Difference between revisions of "Supported beta-diversity Measures"

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(New page: Qualitative measures (require a rooted split system): * Bray-Curtis (aka: normalized weighted UniFrac, Sorensen, Steinhaus, Odum, percentage difference, pairwise Whittaker) * Canberra * Ch...) |
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− | Qualitative measures | + | Qualitative measures requiring a rooted split system: |

− | * Bray-Curtis (aka: | + | * Bray-Curtis (aka: Sorensen, PhyloSor, Dice's index, pairwise Whittaker) |

* Canberra | * Canberra | ||

− | |||

* Coefficient of similarity | * Coefficient of similarity | ||

− | * | + | * Euclidean |

− | + | ||

* Gower | * Gower | ||

− | |||

* Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath) | * Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath) | ||

* Lennon compositional difference | * Lennon compositional difference | ||

− | * | + | * Manhattan (aka: Hamming distance) |

− | + | * Soergel (aka: unweighted UniFrac, Jaccard, Ruzicka) | |

− | + | ||

− | + | ||

− | + | ||

− | * Soergel (aka: | + | |

− | + | ||

* Tamas coefficient (TC) (aka: simple matching coefficient) | * Tamas coefficient (TC) (aka: simple matching coefficient) | ||

− | * | + | * Weighted correlation |

+ | |||

+ | Quantitative measures requiring a rooted split system (use -w flag): | ||

+ | * Bray-Curtis (aka: normalized weighted UniFrac, percentage difference) | ||

+ | * Canberra | ||

+ | * Coefficient of similarity | ||

+ | * Complete tree | ||

+ | * Euclidean | ||

+ | * Gower | ||

+ | * Kulczynski | ||

+ | * Lennon compositional difference | ||

+ | * Manhattan (aka: weighted UniFrac) | ||

+ | * Morisita-Horn | ||

+ | * Soergel (aka: Ruzicka, Marczewski-Steinhaus, percentage remoteness) | ||

+ | * Tamas coefficient | ||

+ | * Weighted correlation | ||

* Yue-Clayton (aka: similarity ratio) | * Yue-Clayton (aka: similarity ratio) | ||

− | + | Root-invariant quantitative measures (use -w flag): | |

− | + | * Complete tree | |

− | + | ||

− | * | + | |

* Euclidean | * Euclidean | ||

+ | * Gower | ||

+ | * Manhattan (aka: weighted UniFrac) |

## Revision as of 21:32, 10 April 2012

Qualitative measures requiring a rooted split system:

- Bray-Curtis (aka: Sorensen, PhyloSor, Dice's index, pairwise Whittaker)
- Canberra
- Coefficient of similarity
- Euclidean
- Gower
- Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath)
- Lennon compositional difference
- Manhattan (aka: Hamming distance)
- Soergel (aka: unweighted UniFrac, Jaccard, Ruzicka)
- Tamas coefficient (TC) (aka: simple matching coefficient)
- Weighted correlation

Quantitative measures requiring a rooted split system (use -w flag):

- Bray-Curtis (aka: normalized weighted UniFrac, percentage difference)
- Canberra
- Coefficient of similarity
- Complete tree
- Euclidean
- Gower
- Kulczynski
- Lennon compositional difference
- Manhattan (aka: weighted UniFrac)
- Morisita-Horn
- Soergel (aka: Ruzicka, Marczewski-Steinhaus, percentage remoteness)
- Tamas coefficient
- Weighted correlation
- Yue-Clayton (aka: similarity ratio)

Root-invariant quantitative measures (use -w flag):

- Complete tree
- Euclidean
- Gower
- Manhattan (aka: weighted UniFrac)