Difference between revisions of "Supported Beta-diversity Measures"

From Bioinformatics Software
Jump to: navigation, search
Line 1: Line 1:
Quantitative measures:
+
'''Quantitative measures:'''
* Bray-Curtis (aka: normalized weighted UniFrac, Sorensen, Steinhaus, Odum, percentage difference, pairwise Whittaker)
+
* Bray-Curtis (aka: normalized weighted UniFrac, percentage difference)
 
* Canberra
 
* Canberra
 
* Chi-squared
 
* Chi-squared
Line 9: Line 9:
 
* Gower
 
* Gower
 
* Hellinger
 
* Hellinger
* Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath)
+
* Kulczynski
 
* Lennon compositional difference
 
* Lennon compositional difference
 
* Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac)
 
* Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac)
Line 18: Line 18:
 
* Rao's Hp
 
* Rao's Hp
 
* Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness)
 
* Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness)
* Species profile
+
* Tamas coefficient (TC) (aka: simple matching coefficient)
* Tamas coefficient (TC) (aka: simple matching coefficient)
+
* Weighted correlation
 
* Whittaker index of association
 
* Whittaker index of association
 
* Yue-Clayton (aka: similarity ratio)
 
* Yue-Clayton (aka: similarity ratio)
  
Qualitative measures:
+
'''Qualitative measures:'''
* Bray-Curtis (aka: normalized weighted UniFrac, Sorensen, Steinhaus, Odum, percentage difference, pairwise Whittaker)
+
* Bray-Curtis (aka: Sorensen, PhyloSor, Dice)
 
* Canberra
 
* Canberra
* Chi-squared
 
 
* Coefficient of similarity
 
* Coefficient of similarity
* Complete tree
 
 
* Euclidean
 
* Euclidean
* Fst
 
 
* Gower
 
* Gower
* Hellinger
 
 
* Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath)
 
* Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath)
 
* Lennon compositional difference
 
* Lennon compositional difference
* Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac)
+
* Manhattan
 
* Mean nearest neighbour distance (aka: comdistnn)
 
* Mean nearest neighbour distance (aka: comdistnn)
 
* Mean phylogenetic distance (aka: comdist)
 
* Mean phylogenetic distance (aka: comdist)
* Morisita-Horn
 
 
* Pearson product-moment correlation coefficient
 
* Pearson product-moment correlation coefficient
* Rao's Hp
+
* Soergel (aka: Jaccard, unweighted UniFrac)
* Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness)
+
* Species profile
+
 
* Tamas coefficient (TC) (aka: simple matching coefficient)
 
* Tamas coefficient (TC) (aka: simple matching coefficient)
* Whittaker index of association
+
* Weighted correlation
* Yue-Clayton (aka: similarity ratio)
+

Revision as of 13:48, 8 June 2012

Quantitative measures:

  • Bray-Curtis (aka: normalized weighted UniFrac, percentage difference)
  • Canberra
  • Chi-squared
  • Coefficient of similarity
  • Complete tree
  • Euclidean
  • Fst
  • Gower
  • Hellinger
  • Kulczynski
  • Lennon compositional difference
  • Manhattan (aka: taxicab, city-block, unnormalized weighted UniFrac)
  • Mean nearest neighbour distance (aka: comdistnn)
  • Mean phylogenetic distance (aka: comdist)
  • Morisita-Horn
  • Pearson product-moment correlation coefficient
  • Rao's Hp
  • Soergel (aka: Jaccard, unweighted UniFrac, Ruzicka, Marczewski-Steinhaus, percentage remoteness)
  • Tamas coefficient (TC) (aka: simple matching coefficient)
  • Weighted correlation
  • Whittaker index of association
  • Yue-Clayton (aka: similarity ratio)

Qualitative measures:

  • Bray-Curtis (aka: Sorensen, PhyloSor, Dice)
  • Canberra
  • Coefficient of similarity
  • Euclidean
  • Gower
  • Kulczynski (aka: Kulczynski-Cody, Sokal-Sneath)
  • Lennon compositional difference
  • Manhattan
  • Mean nearest neighbour distance (aka: comdistnn)
  • Mean phylogenetic distance (aka: comdist)
  • Pearson product-moment correlation coefficient
  • Soergel (aka: Jaccard, unweighted UniFrac)
  • Tamas coefficient (TC) (aka: simple matching coefficient)
  • Weighted correlation