Difference between revisions of "STAMP example datasets"

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The following data sets were analyzed in ''Parks, D.H. and Beiko, R.G. (2010). Identifying biologically relevant differences between metagenomic communities. Bioinformatics, 26, 715-721.'' ([http://bioinformatics.oxfordjournals.org/cgi/content/short/26/6/715 Abstract]):
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The following data sets were analyzed in ''Parks, DH, Tyson GW, Hugenholtz P, Beiko RG. (2014). STAMP: Statistical analysis of taxonomic and functional profiles. Submitted to Bioinformatics in June, 2014.'':
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* [[Media:stamp2_examples.zip|Taxonomic profiles of coal seam gas communities and COG profiles for Cyanobacterial genomes.]]
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The following data sets were analyzed in ''Parks, DH and Beiko, RG. (2010). Identifying biologically relevant differences between metagenomic communities. Bioinformatics, 26, 715-721.'' ([http://bioinformatics.oxfordjournals.org/cgi/content/short/26/6/715 Abstract]):
  
 
* [[Media:RedBlack.spf|SEED functional profile for Soudin iron mine metagenomes]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006])
 
* [[Media:RedBlack.spf|SEED functional profile for Soudin iron mine metagenomes]] (data originally described in [http://www.ncbi.nlm.nih.gov/pubmed/16549033 Edwards et al., 2006])
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'''Note''': additional datasets can be found in the ''examples'' folder of STAMP or downloaded [here|].
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'''Note''': additional datasets can be found in the ''examples'' folder of STAMP or downloaded [[Media:stamp_examples.zip|here]].

Revision as of 23:56, 25 May 2014

The following data sets were analyzed in Parks, DH, Tyson GW, Hugenholtz P, Beiko RG. (2014). STAMP: Statistical analysis of taxonomic and functional profiles. Submitted to Bioinformatics in June, 2014.:

The following data sets were analyzed in Parks, DH and Beiko, RG. (2010). Identifying biologically relevant differences between metagenomic communities. Bioinformatics, 26, 715-721. (Abstract):


The User's guide makes use of the following data set:


Note: additional datasets can be found in the examples folder of STAMP or downloaded here.