Difference between revisions of "STAMP example datasets"

From Bioinformatics Software
Jump to: navigation, search
Line 10: Line 10:
  
  
STAMP is compatible with functional and taxonomic profiles generated by (see User's guide for details):
+
'''Note''': additional datasets can be found in the ''examples'' folder of STAMP or downloaded [here|].
 
+
* [http://metagenomics.nmpdr.org/ MG-RAST]
+
* [http://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=AbundanceProfiles&page=mergedForm IMG/M]
+
 
+
 
+
'''Note''': additional datasets can be found in the ''examples'' folder of STAMP.
+

Revision as of 23:46, 25 May 2014

The following data sets were analyzed in Parks, D.H. and Beiko, R.G. (2010). Identifying biologically relevant differences between metagenomic communities. Bioinformatics, 26, 715-721. (Abstract):


The User's guide makes use of the following data set:


Note: additional datasets can be found in the examples folder of STAMP or downloaded [here|].