Difference between revisions of "SPR Supertrees version history"

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(New page: __NOTOC__ ==1.00== * initial program version. * Computes rooted supertrees that minimize the rooted SPR distance using exact calculations or varying levels of approximation. * Optionally...)
 
(1.00)
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==1.00==
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==1.1.0==
 +
* Trees can be multifurcating with -allow_multi option
 +
* Much faster SPR distance calculations
 +
* Many new options including collapsing unsupported bipartitions, fast consideration of unrooted trees with -simple_unrooted option, starting from a specified tree with -initial_tree option, limiting the radius of considered SPR permutations with -r option (-r 1 uses NNI permutations)
 +
 
 +
==1.0.0==
 
* initial program version.
 
* initial program version.
 
* Computes rooted supertrees that minimize the rooted SPR distance using exact calculations or varying levels of approximation.
 
* Computes rooted supertrees that minimize the rooted SPR distance using exact calculations or varying levels of approximation.
 
* Optionally computes rooted supertrees that minimize the SPR distance to any rooting of a list of unrooted input trees.
 
* Optionally computes rooted supertrees that minimize the SPR distance to any rooting of a list of unrooted input trees.
 
* Version used in ''"Subtree Prune-and-Regraft Supertrees."''
 
* Version used in ''"Subtree Prune-and-Regraft Supertrees."''

Revision as of 02:58, 7 July 2012


1.1.0

  • Trees can be multifurcating with -allow_multi option
  • Much faster SPR distance calculations
  • Many new options including collapsing unsupported bipartitions, fast consideration of unrooted trees with -simple_unrooted option, starting from a specified tree with -initial_tree option, limiting the radius of considered SPR permutations with -r option (-r 1 uses NNI permutations)

1.0.0

  • initial program version.
  • Computes rooted supertrees that minimize the rooted SPR distance using exact calculations or varying levels of approximation.
  • Optionally computes rooted supertrees that minimize the SPR distance to any rooting of a list of unrooted input trees.
  • Version used in "Subtree Prune-and-Regraft Supertrees."