Useful Software

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Contents

Machine Learning

  • libSVM - Support vector machine library for classification and/or regression.


Molecular Visualization

  • VMD - 3D molecular visualization and animation. (Ubuntu: You'll need csh and libc++5 to have it running properly.)

Phylogenetic Networks

  • SplitsTree - Computes phylogenetic trees and networks from molecular sequence data, distance matrices, etc.
  • RaxML - ML Phylogenies

Statistical Analysis

  • R - The R Project for Statistical Computing
    • Scott has put together a few R Notes