Difference between revisions of "GenGIS Tutorials"

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(Tutorial 2: Marine Microbial Communities from the Atlantic Seaboard)
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In this tutorial, we examine samples collected as part of the Global Ocean Sampling metagenomic survey [2] in order to investigate the influence of environmental factors on the composition of microbial communities from marine ecosystems.  
 
In this tutorial, we examine samples collected as part of the Global Ocean Sampling metagenomic survey [2] in order to investigate the influence of environmental factors on the composition of microbial communities from marine ecosystems.  
  
[[Media:GenGIS_GOS_Movie.zip|Download video tutorial]]
+
[[Media:GenGIS_GOS_Movie.zip|Download video tutorial]] (21 MB)
  
 
[[Media:GenGIS_GOS_Data.zip|Download GOS data set]]
 
[[Media:GenGIS_GOS_Data.zip|Download GOS data set]]

Revision as of 01:26, 4 May 2009

We have put together a few tutorials to get you quickly started with GenGIS.

Tutorial 1: Banza Katydids of the Hawaiian Islands

Geophylogeny of Banza katydids from the Hawaiian Islands

In this tutorial, we consider the phylogenetic tree of Banza katydids (acoustic insects) from the Hawaiian Islands recently recovered by Shapiro et al. [1]. GenGIS will be used to investigate whether or not this phylogeny is related to the geography of the Hawaiian Islands.

Download text tutorial

Download video tutorial (27 MB)

Download katydid data set

Stream the video tutorial

Tutorial 2: Marine Microbial Communities from the Atlantic Seaboard

In this tutorial, we examine samples collected as part of the Global Ocean Sampling metagenomic survey [2] in order to investigate the influence of environmental factors on the composition of microbial communities from marine ecosystems.

Download video tutorial (21 MB)

Download GOS data set

Stream the video tutorial

References

[1] L. H. Shapiro, J. S. Strazanac, and G. K. Roderick. (2006) Molecular phylogeny of Banza (Orthoptera: Tettigoniidae), the endemic katydids of the Hawaiian Archipelago. Mol. Phylogenet. Evol. 41:53-63. Pubmed

[2] D. Rusch, A. Halpern, G. Sutton, et al., (2007) "The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific," PLoS Biol. 5:e77. PubMed